About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
Originally created by libAntimony v1.4 (using libSBML 3.4.1) This is an SBML implementation the model of negative feedback oscillator (figure 2a) described in the article: Sniffers, buzzers, toggles a. It can be used to explore systemsbiology tyson2003 negfb oscillator BioModels0000000308 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_yp",
"label": "Initial Model State Yp",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_yp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Yp`."
},
{
"name": "initial_model_state_rp",
"label": "Initial Model State Rp",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_rp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Rp`."
},
{
"name": "initial_model_state_y",
"label": "Initial Model State Y",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_y",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Y`."
},
{
"name": "initial_model_state_x",
"label": "Initial Model State X",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_x",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `X`."
},
{
"name": "initial_model_state_s",
"label": "Initial Model State S",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_s",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `S`."
},
{
"name": "initial_model_state_r",
"label": "Initial Model State R",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_r",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `R`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.species_labels"
},
{
"name": "model_state_yp",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_yp"
},
{
"name": "model_state_rp",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_rp"
},
{
"name": "model_state_y",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_y"
},
{
"name": "model_state_x",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_x"
},
{
"name": "model_state_s",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_s"
},
{
"name": "model_state_r",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_r"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Tyson2003 Negfb Oscillator Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model_state"
],
"from": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model_summary"
],
"from": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model_species_labels"
],
"from": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.species_labels"
}
],
"package": "tyson2003-negfb-oscillator",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Originally created by libAntimony v1.4 (using libSBML 3.4.1) This is an SBML implementation the model of negative feedback oscillator (figure 2a) described in the article: Sniffers, buzzers, toggles a. It can be used to explore systemsbiology tyson2003 negfb oscillator BioModels0000000308 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagetyson2003-negfb-oscillator
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother