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Curated microbiology lab for Voit2003 - Trehalose Cycle. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.
Manifest
{
"io": {
"inputs": [
{
"name": "heat_shock",
"maps_to": "voit2003_yeast_trehalose_cycle.heat_shock"
}
],
"outputs": [
{
"name": "state",
"maps_to": "voit2003_yeast_trehalose_cycle.state"
},
{
"name": "summary",
"maps_to": "voit2003_yeast_trehalose_cycle.summary"
},
{
"name": "species_labels",
"maps_to": "voit2003_yeast_trehalose_cycle.species_labels"
},
{
"name": "glucose",
"maps_to": "voit2003_yeast_trehalose_cycle.glucose"
},
{
"name": "glucose_pool_2",
"maps_to": "voit2003_yeast_trehalose_cycle.glucose_pool_2"
},
{
"name": "glucose_6_phosphate",
"maps_to": "voit2003_yeast_trehalose_cycle.glucose_6_phosphate"
},
{
"name": "glucose_1_phosphate",
"maps_to": "voit2003_yeast_trehalose_cycle.glucose_1_phosphate"
}
]
},
"title": "Voit2003 - Trehalose Cycle Lab",
"models": [
{
"path": "models/core",
"alias": "voit2003_yeast_trehalose_cycle"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.voit2003_yeast_trehalose_cycle_state"
],
"from": "voit2003_yeast_trehalose_cycle.state"
},
{
"to": [
"visualisation.voit2003_yeast_trehalose_cycle_summary"
],
"from": "voit2003_yeast_trehalose_cycle.summary"
},
{
"to": [
"visualisation.voit2003_yeast_trehalose_cycle_species_labels"
],
"from": "voit2003_yeast_trehalose_cycle.species_labels"
},
{
"to": [
"visualisation.voit2003_yeast_trehalose_cycle_glucose"
],
"from": "voit2003_yeast_trehalose_cycle.glucose"
},
{
"to": [
"visualisation.voit2003_yeast_trehalose_cycle_glucose_pool_2"
],
"from": "voit2003_yeast_trehalose_cycle.glucose_pool_2"
},
{
"to": [
"visualisation.voit2003_yeast_trehalose_cycle_glucose_6_phosphate"
],
"from": "voit2003_yeast_trehalose_cycle.glucose_6_phosphate"
},
{
"to": [
"visualisation.voit2003_yeast_trehalose_cycle_glucose_1_phosphate"
],
"from": "voit2003_yeast_trehalose_cycle.glucose_1_phosphate"
}
],
"package": "voit2003-yeast-trehalose-cycle",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Curated microbiology lab for Voit2003 - Trehalose Cycle. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step0.01
Runs
Total0
Completed0
Failed0
Metadata
Packagevoit2003-yeast-trehalose-cycle
Created2026-05-15
Updated2026-06-13
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisationother