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Source-faithful physiology lab for Novak, Tyson, 1993. Public controls and outputs are mapped to real source symbols for cell-cycle dynamics.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cdc25_p",
"label": "Initial Cdc25 P",
"maps_to": "physiology_cellml_novak_tyson_1993_314_model.initial_cdc25_p",
"description": "Initial value for Cdc25 P. Maps to source symbol `Cdc25_P`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_cyclin",
"label": "Initial Cyclin",
"maps_to": "physiology_cellml_novak_tyson_1993_314_model.initial_cyclin",
"description": "Initial value for Cyclin. Maps to source symbol `cyclin`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_novak_tyson_1993_314_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_novak_tyson_1993_314_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_novak_tyson_1993_314_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_novak_tyson_1993_314_model.variable_labels"
},
{
"name": "cdc25_p",
"label": "Cdc25 P",
"maps_to": "physiology_cellml_novak_tyson_1993_314_model.cdc25_p",
"description": "Cdc25 P. Maps to source symbol `Cdc25_P`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "cyclin",
"label": "Cyclin",
"maps_to": "physiology_cellml_novak_tyson_1993_314_model.cyclin",
"description": "Cyclin. Maps to source symbol `cyclin`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "cyclin_cdc2",
"label": "Cyclin Cdc2",
"maps_to": "physiology_cellml_novak_tyson_1993_314_model.cyclin_cdc2",
"description": "Cyclin Cdc2. Maps to source symbol `cyclin_Cdc2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ie_p",
"label": "Ie P",
"maps_to": "physiology_cellml_novak_tyson_1993_314_model.ie_p",
"description": "Ie P. Maps to source symbol `IE_P`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "mpf_active",
"label": "Mpf Active",
"maps_to": "physiology_cellml_novak_tyson_1993_314_model.mpf_active",
"description": "Mpf Active. Maps to source symbol `MPF_active`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "mpf_pre",
"label": "Mpf Pre",
"maps_to": "physiology_cellml_novak_tyson_1993_314_model.mpf_pre",
"description": "Mpf Pre. Maps to source symbol `MPF_pre`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Novak1993 - Numerical Analysis Comprehensive M Phase Control Xenopus Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_novak_tyson_1993_314_model",
"parameters": {
"model_path": "data/novak_tyson_1993_a.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_novak_tyson_1993_314_model_state"
],
"from": "physiology_cellml_novak_tyson_1993_314_model.state"
},
{
"to": [
"visualisation.physiology_cellml_novak_tyson_1993_314_model_summary"
],
"from": "physiology_cellml_novak_tyson_1993_314_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_novak_tyson_1993_314_model_trajectory"
],
"from": "physiology_cellml_novak_tyson_1993_314_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_novak_tyson_1993_314_model_variable_labels"
],
"from": "physiology_cellml_novak_tyson_1993_314_model.variable_labels"
}
],
"package": "novak1993-numerical-analysis-comprehensive-m-phase-cont-99403686",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Novak, Tyson, 1993. Public controls and outputs are mapped to real source symbols for cell-cycle dynamics.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagenovak1993-numerical-analysis-comprehensive-m-phase-cont-99403686
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother