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Curated microbiology lab for Shaw2019 - Digital biosensor model from Yeast. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.
Manifest
{
"io": {
"inputs": [
{
"name": "ligand_level",
"maps_to": "shaw2019_yeast_digital_biosensor.ligand_level"
}
],
"outputs": [
{
"name": "state",
"maps_to": "shaw2019_yeast_digital_biosensor.state"
},
{
"name": "summary",
"maps_to": "shaw2019_yeast_digital_biosensor.summary"
},
{
"name": "species_labels",
"maps_to": "shaw2019_yeast_digital_biosensor.species_labels"
},
{
"name": "receptor_state_1",
"maps_to": "shaw2019_yeast_digital_biosensor.receptor_state_1"
},
{
"name": "active_receptor_state_1",
"maps_to": "shaw2019_yeast_digital_biosensor.active_receptor_state_1"
},
{
"name": "inactive_gprotein_state_1",
"maps_to": "shaw2019_yeast_digital_biosensor.inactive_gprotein_state_1"
},
{
"name": "active_gprotein_state_1",
"maps_to": "shaw2019_yeast_digital_biosensor.active_gprotein_state_1"
}
]
},
"title": "Shaw2019 - Digital biosensor model from Yeast Lab",
"models": [
{
"path": "models/core",
"alias": "shaw2019_yeast_digital_biosensor"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.shaw2019_yeast_digital_biosensor_state"
],
"from": "shaw2019_yeast_digital_biosensor.state"
},
{
"to": [
"visualisation.shaw2019_yeast_digital_biosensor_summary"
],
"from": "shaw2019_yeast_digital_biosensor.summary"
},
{
"to": [
"visualisation.shaw2019_yeast_digital_biosensor_species_labels"
],
"from": "shaw2019_yeast_digital_biosensor.species_labels"
},
{
"to": [
"visualisation.shaw2019_yeast_digital_biosensor_receptor_state_1"
],
"from": "shaw2019_yeast_digital_biosensor.receptor_state_1"
},
{
"to": [
"visualisation.shaw2019_yeast_digital_biosensor_active_receptor_state_1"
],
"from": "shaw2019_yeast_digital_biosensor.active_receptor_state_1"
},
{
"to": [
"visualisation.shaw2019_yeast_digital_biosensor_inactive_gprotein_state_1"
],
"from": "shaw2019_yeast_digital_biosensor.inactive_gprotein_state_1"
},
{
"to": [
"visualisation.shaw2019_yeast_digital_biosensor_active_gprotein_state_1"
],
"from": "shaw2019_yeast_digital_biosensor.active_gprotein_state_1"
}
],
"package": "shaw2019-yeast-digital-biosensor",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Curated microbiology lab for Shaw2019 - Digital biosensor model from Yeast. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step0.01
Runs
Total0
Completed0
Failed0
Metadata
Packageshaw2019-yeast-digital-biosensor
Created2026-05-15
Updated2026-06-13
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisationother