Malys2010 - Systems Biology Pipeline Biochemical Networks Its Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_x_01",
        "label": "Initial Model State X 01 (source x_01)",
        "maps_to": "physiology_cellml_malys_et_al_2010_malys2010_model.initial_model_state_x_01",
        "description": "Initial value for Model State X 01 (source x_01). Maps to source symbol `x_01`. Units: mM. Naming evidence: source symbol is too ambiguous for a stronger public label.",
        "accepted_units": [
          "mM"
        ]
      },
      {
        "name": "initial_model_state_x_02",
        "label": "Initial Model State X 02 (source x_02)",
        "maps_to": "physiology_cellml_malys_et_al_2010_malys2010_model.initial_model_state_x_02",
        "description": "Initial value for Model State X 02 (source x_02). Maps to source symbol `x_02`. Units: mM. Naming evidence: source symbol is too ambiguous for a stronger public label.",
        "accepted_units": [
          "mM"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_malys_et_al_2010_malys2010_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_malys_et_al_2010_malys2010_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_malys_et_al_2010_malys2010_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_malys_et_al_2010_malys2010_model.variable_labels"
      },
      {
        "name": "size",
        "label": "Size",
        "maps_to": "physiology_cellml_malys_et_al_2010_malys2010_model.size",
        "description": "Size. Maps to source symbol `size`. Units: litre. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_potassium",
        "label": "Intracellular Potassium",
        "maps_to": "physiology_cellml_malys_et_al_2010_malys2010_model.intracellular_potassium",
        "description": "Intracellular Potassium. Maps to source symbol `Ki`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "catp",
        "label": "Catp",
        "maps_to": "physiology_cellml_malys_et_al_2010_malys2010_model.catp",
        "description": "Catp. Maps to source symbol `Catp`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ciatp",
        "label": "Ciatp",
        "maps_to": "physiology_cellml_malys_et_al_2010_malys2010_model.ciatp",
        "description": "Ciatp. Maps to source symbol `Ciatp`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "katp",
        "label": "Katp",
        "maps_to": "physiology_cellml_malys_et_al_2010_malys2010_model.katp",
        "description": "Katp. Maps to source symbol `Katp`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "katp_pyk",
        "label": "Katp Pyk",
        "maps_to": "physiology_cellml_malys_et_al_2010_malys2010_model.katp_pyk",
        "description": "Katp Pyk. Maps to source symbol `Katp_pyk`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Malys2010 - Systems Biology Pipeline Biochemical Networks Its Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_malys_et_al_2010_malys2010_model",
      "parameters": {
        "model_path": "data/malys_2010.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_malys_et_al_2010_malys2010_model_state"
      ],
      "from": "physiology_cellml_malys_et_al_2010_malys2010_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_malys_et_al_2010_malys2010_model_summary"
      ],
      "from": "physiology_cellml_malys_et_al_2010_malys2010_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_malys_et_al_2010_malys2010_model_trajectory"
      ],
      "from": "physiology_cellml_malys_et_al_2010_malys2010_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_malys_et_al_2010_malys2010_model_variable_labels"
      ],
      "from": "physiology_cellml_malys_et_al_2010_malys2010_model.variable_labels"
    }
  ],
  "package": "malys2010-systems-biology-pipeline-biochemical-networks-its",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Malys et al. 2010. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}