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Curated microbiology lab for Tan2012 - Antibiotic Treatment, Inoculum Effect. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.
Manifest
{
"io": {
"inputs": [
{
"name": "antibiotic_killing_rate",
"maps_to": "tan2012_antibiotic_inoculum_effect.antibiotic_killing_rate"
},
{
"name": "initial_ribosome_concentration",
"maps_to": "tan2012_antibiotic_inoculum_effect.initial_ribosome_concentration"
}
],
"outputs": [
{
"name": "state",
"maps_to": "tan2012_antibiotic_inoculum_effect.state"
},
{
"name": "summary",
"maps_to": "tan2012_antibiotic_inoculum_effect.summary"
},
{
"name": "species_labels",
"maps_to": "tan2012_antibiotic_inoculum_effect.species_labels"
},
{
"name": "ribosome_concentration",
"maps_to": "tan2012_antibiotic_inoculum_effect.ribosome_concentration"
}
]
},
"title": "Tan2012 - Antibiotic Treatment, Inoculum Effect Lab",
"models": [
{
"path": "models/core",
"alias": "tan2012_antibiotic_inoculum_effect"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.tan2012_antibiotic_inoculum_effect_state"
],
"from": "tan2012_antibiotic_inoculum_effect.state"
},
{
"to": [
"visualisation.tan2012_antibiotic_inoculum_effect_summary"
],
"from": "tan2012_antibiotic_inoculum_effect.summary"
},
{
"to": [
"visualisation.tan2012_antibiotic_inoculum_effect_species_labels"
],
"from": "tan2012_antibiotic_inoculum_effect.species_labels"
},
{
"to": [
"visualisation.tan2012_antibiotic_inoculum_effect_ribosome_concentration"
],
"from": "tan2012_antibiotic_inoculum_effect.ribosome_concentration"
}
],
"package": "tan2012-antibiotic-inoculum-effect",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Curated microbiology lab for Tan2012 - Antibiotic Treatment, Inoculum Effect. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step0.01
Runs
Total0
Completed0
Failed0
Metadata
Packagetan2012-antibiotic-inoculum-effect
Created2026-05-15
Updated2026-06-13
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisationother