About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
This a model from the article: Bistability in apoptosis: roles of bax, bcl-2, and mitochondrial permeabilitytransition pores. Bagci EZ, Vodovotz Y, Billiar TR, Ermentrout GB, Bahar I.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cytc_apaf_1",
"label": "Initial Cytc Apaf 1",
"maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.initial_cytc_apaf_1",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CytcApaf_1`."
},
{
"name": "initial_casp9_pro3",
"label": "Initial Casp9 Pro3",
"maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.initial_casp9_pro3",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Casp9Pro3`."
},
{
"name": "initial_casp9_iap",
"label": "Initial Casp9 Iap",
"maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.initial_casp9_iap",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Casp9IAP`."
},
{
"name": "initial_casp9",
"label": "Initial Casp9",
"maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.initial_casp9",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Casp9`."
},
{
"name": "initial_casp8_bid",
"label": "Initial Casp8 Bid",
"maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.initial_casp8_bid",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Casp8Bid`."
},
{
"name": "initial_casp8",
"label": "Initial Casp8",
"maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.initial_casp8",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Casp8`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.species_labels"
},
{
"name": "cytc_apaf_1",
"maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.cytc_apaf_1"
},
{
"name": "casp9_pro3",
"maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.casp9_pro3"
},
{
"name": "casp9_iap",
"maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.casp9_iap"
},
{
"name": "casp9",
"maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.casp9"
},
{
"name": "casp8_bid",
"maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.casp8_bid"
},
{
"name": "casp8",
"maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.casp8"
}
]
},
"tags": [
"metabolism",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Bagci2006 Apoptoticstimuli Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model_state"
],
"from": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model_summary"
],
"from": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model_species_labels"
],
"from": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.species_labels"
}
],
"package": "bagci2006-apoptoticstimuli",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This a model from the article: Bistability in apoptosis: roles of bax, bcl-2, and mitochondrial permeabilitytransition pores. Bagci EZ, Vodovotz Y, Billiar TR, Ermentrout GB, Bahar I.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebagci2006-apoptoticstimuli
Created2026-05-17
Updated2026-06-13
metabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother