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Clean Biosimulant lab for calcium and second-messenger signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_source_defined_rs_state",
"label": "Initial source-defined RS state",
"maps_to": "signaling_sbml_lemon2003_ca2dynamics_model1006230039_model.initial_source_defined_rs_state",
"description": "Initial level of source-defined RS state. Maps to SBML symbol `RS`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "source_defined_rs_p_state",
"label": "source-defined RS_P state",
"maps_to": "signaling_sbml_lemon2003_ca2dynamics_model1006230039_model.source_defined_rs_p_state",
"description": "source-defined RS_P state. Maps to SBML symbol `RS_p` and is emitted in native SBML units."
},
{
"name": "ip3",
"label": "IP3",
"maps_to": "signaling_sbml_lemon2003_ca2dynamics_model1006230039_model.ip3",
"description": "IP3. Maps to SBML symbol `IP_3` and is emitted in native SBML units."
},
{
"name": "source_defined_pip_2_state",
"label": "source-defined PIP_2 state",
"maps_to": "signaling_sbml_lemon2003_ca2dynamics_model1006230039_model.source_defined_pip_2_state",
"description": "source-defined PIP_2 state. Maps to SBML symbol `PIP_2` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_lemon2003_ca2dynamics_model1006230039_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_lemon2003_ca2dynamics_model1006230039_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_lemon2003_ca2dynamics_model1006230039_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"calcium-signaling",
"gpcr"
],
"title": "Lemon2003_Ca2Dynamics Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_lemon2003_ca2dynamics_model1006230039_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_lemon2003_ca2dynamics_model1006230039_model_state"
],
"from": "signaling_sbml_lemon2003_ca2dynamics_model1006230039_model.state"
},
{
"to": [
"visualisation.signaling_sbml_lemon2003_ca2dynamics_model1006230039_model_summary"
],
"from": "signaling_sbml_lemon2003_ca2dynamics_model1006230039_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_lemon2003_ca2dynamics_model1006230039_model_species_labels"
],
"from": "signaling_sbml_lemon2003_ca2dynamics_model1006230039_model.species_labels"
}
],
"package": "lemon2003-ca2dynamics",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for calcium and second-messenger signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagelemon2003-ca2dynamics
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicalcium-signalinggpcrvisualisationother