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Source-faithful physiology lab for Farhy, Bowers, Veldhuis, 2007. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_growth_hormone",
"label": "Initial Growth Hormone",
"maps_to": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.initial_growth_hormone",
"description": "Initial value for Growth Hormone. Maps to source symbol `GH`. Units: ng_ml. Naming evidence: source metadata names `GH` as `growth hormone`.",
"accepted_units": [
"ng_ml"
]
},
{
"name": "initial_growth_hormone_releasing_hormone",
"label": "Initial Growth Hormone Releasing Hormone",
"maps_to": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.initial_growth_hormone_releasing_hormone",
"description": "Initial value for Growth Hormone Releasing Hormone. Maps to source symbol `GHRH`. Units: pg_ml. Naming evidence: source metadata names `GHRH` as `growth hormone releasing hormone`.",
"accepted_units": [
"pg_ml"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.variable_labels"
},
{
"name": "growth_hormone",
"label": "Growth Hormone",
"maps_to": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.growth_hormone",
"description": "Growth Hormone. Maps to source symbol `GH`. Units: ng_ml. Naming evidence: source metadata names `GH` as `growth hormone`."
},
{
"name": "growth_hormone_releasing_hormone",
"label": "Growth Hormone Releasing Hormone",
"maps_to": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.growth_hormone_releasing_hormone",
"description": "Growth Hormone Releasing Hormone. Maps to source symbol `GHRH`. Units: pg_ml. Naming evidence: source metadata names `GHRH` as `growth hormone releasing hormone`."
},
{
"name": "simulation_of_ghrh_infusion",
"label": "Simulation Of Ghrh Infusion",
"maps_to": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.simulation_of_ghrh_infusion",
"description": "Simulation Of Ghrh Infusion. Maps to source symbol `ghr_GHRH`. Units: pg_ml. Naming evidence: source metadata names `ghr_GHRH` as `simulation of GHRH infusion`."
},
{
"name": "somatostatin_in_the_arcuate_nucleus",
"label": "Somatostatin In The Arcuate Nucleus",
"maps_to": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.somatostatin_in_the_arcuate_nucleus",
"description": "Somatostatin In The Arcuate Nucleus. Maps to source symbol `SRIF_ArC`. Units: pg_ml. Naming evidence: source metadata names `SRIF_ArC` as `somatostatin in the arcuate nucleus`."
},
{
"name": "somatostatin_in_the_periventricular_nucleus",
"label": "Somatostatin In The Periventricular Nucleus",
"maps_to": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.somatostatin_in_the_periventricular_nucleus",
"description": "Somatostatin In The Periventricular Nucleus. Maps to source symbol `SRIF_PeV`. Units: pg_ml. Naming evidence: source metadata names `SRIF_PeV` as `somatostatin in the periventricular nucleus`."
},
{
"name": "dghr_ghrh_dt",
"label": "Dghr Ghrh Dt",
"maps_to": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.dghr_ghrh_dt",
"description": "Dghr Ghrh Dt. Maps to source symbol `dghr_GHRH_dt`. Units: pg_ml_hr. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Farhy2007 - Projected Mechanistic Bases Sex Differences Growth Hormone Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model",
"parameters": {
"model_path": "data/farhy_bowers_veldhuis_2007_a.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model_state"
],
"from": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.state"
},
{
"to": [
"visualisation.physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model_summary"
],
"from": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model_trajectory"
],
"from": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model_variable_labels"
],
"from": "physiology_cellml_farhy_bowers_veldhuis_2007_farhybowersveldhuis2007_model.variable_labels"
}
],
"package": "farhy2007-projected-mechanistic-bases-sex-differences-g-af24fd87",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Farhy, Bowers, Veldhuis, 2007. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagefarhy2007-projected-mechanistic-bases-sex-differences-g-af24fd87
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother