About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
Source-faithful physiology lab for A mathematical model of the neural regulation of phasic contractions and slow waves in the distal stomach. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `Vm`. Units: voltage_units. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"voltage_units"
]
},
{
"name": "initial_intracellular_calcium",
"label": "Initial Intracellular Calcium",
"maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.initial_intracellular_calcium",
"description": "Initial value for Intracellular Calcium. Maps to source symbol `Ca_i`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"micromolar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.variable_labels"
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `Vm`. Units: voltage_units. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_calcium",
"label": "Intracellular Calcium",
"maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.intracellular_calcium",
"description": "Intracellular Calcium. Maps to source symbol `Ca_i`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "calcium_current",
"label": "Calcium Current",
"maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.calcium_current",
"description": "Calcium Current. Maps to source symbol `I_CaT`. Units: current_units. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current",
"label": "Sodium Current",
"maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.sodium_current",
"description": "Sodium Current. Maps to source symbol `I_Na_SM`. Units: current_units. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current_i_bna",
"label": "Sodium Current I Bna",
"maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.sodium_current_i_bna",
"description": "Sodium Current I Bna. Maps to source symbol `I_BNa`. Units: current_units. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "vm_sm",
"label": "Vm Sm",
"maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.vm_sm",
"description": "Vm Sm. Maps to source symbol `Vm_SM`. Units: voltage_units. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Physiome b01 - Mathematical Neural Regulation Phasic Contractions Slow Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model",
"parameters": {
"model_path": "data/ICC_SMC_Neuro.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model_state"
],
"from": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.state"
},
{
"to": [
"visualisation.physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model_summary"
],
"from": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model_trajectory"
],
"from": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model_variable_labels"
],
"from": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.variable_labels"
}
],
"package": "physiomeb01-mathematical-neural-regulation-phasic-contr-5388443c",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for A mathematical model of the neural regulation of phasic contractions and slow waves in the distal stomach. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiomeb01-mathematical-neural-regulation-phasic-contr-5388443c
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother