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Source-faithful physiology lab for Holmes 2006. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_l_ce",
"label": "Initial Model State L Ce (source L_ce)",
"maps_to": "physiology_cellml_holmes_2006_holmes2006_model.initial_model_state_l_ce",
"description": "Initial value for Model State L Ce (source L_ce). Maps to source symbol `L_ce`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_holmes_2006_holmes2006_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_holmes_2006_holmes2006_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_holmes_2006_holmes2006_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_holmes_2006_holmes2006_model.variable_labels"
},
{
"name": "model_state_l_ce",
"label": "Model State L Ce (source L_ce)",
"maps_to": "physiology_cellml_holmes_2006_holmes2006_model.model_state_l_ce",
"description": "Model State L Ce (source L_ce). Maps to source symbol `L_ce`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
},
{
"name": "alpha",
"label": "Alpha",
"maps_to": "physiology_cellml_holmes_2006_holmes2006_model.alpha",
"description": "Alpha. Maps to source symbol `alpha`. Units: mNpermmsq. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "contraction_a",
"label": "Contraction A",
"maps_to": "physiology_cellml_holmes_2006_holmes2006_model.contraction_a",
"description": "Contraction A. Maps to source symbol `a`. Units: mNpermmsq. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "contraction_b",
"label": "Contraction B",
"maps_to": "physiology_cellml_holmes_2006_holmes2006_model.contraction_b",
"description": "Contraction B. Maps to source symbol `b`. Units: pms. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "contraction_l",
"label": "Contraction L",
"maps_to": "physiology_cellml_holmes_2006_holmes2006_model.contraction_l",
"description": "Contraction L. Maps to source symbol `L`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "contraction_p",
"label": "Contraction P",
"maps_to": "physiology_cellml_holmes_2006_holmes2006_model.contraction_p",
"description": "Contraction P. Maps to source symbol `P`. Units: mNpermmsq. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Holmes2006 - Teaching Classic Papers Hill Muscle Contraction Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_holmes_2006_holmes2006_model",
"parameters": {
"model_path": "data/holmes_2006.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_holmes_2006_holmes2006_model_state"
],
"from": "physiology_cellml_holmes_2006_holmes2006_model.state"
},
{
"to": [
"visualisation.physiology_cellml_holmes_2006_holmes2006_model_summary"
],
"from": "physiology_cellml_holmes_2006_holmes2006_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_holmes_2006_holmes2006_model_trajectory"
],
"from": "physiology_cellml_holmes_2006_holmes2006_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_holmes_2006_holmes2006_model_variable_labels"
],
"from": "physiology_cellml_holmes_2006_holmes2006_model.variable_labels"
}
],
"package": "holmes2006-teaching-classic-papers-hill-muscle-contraction",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Holmes 2006. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageholmes2006-teaching-classic-papers-hill-muscle-contraction
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother