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The paper describes a model of tumor growth with angiogenesis. Created by COPASI 4.26 (Build 213) This model is described in the article: Mathematical modeling of solid cancer growth with angiogenesis.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cancer_cells",
"label": "Cancer Cells",
"units": "native SBML value",
"default": 9,
"maps_to": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.initial_cancer_cells",
"description": "Initial Cancer Cells. Sets the initial value of bundled SBML symbol `C`."
},
{
"name": "initial_endothelial_cells",
"label": "Endothelial Cells",
"units": "native SBML value",
"default": 10,
"maps_to": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.initial_endothelial_cells",
"description": "Initial Endothelial Cells. Sets the initial value of bundled SBML symbol `E`."
}
],
"outputs": [
{
"name": "cancer_cells",
"maps_to": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.cancer_cells",
"description": "Cancer Cells observable. Maps to SBML symbol `C`."
},
{
"name": "endothelial_cells",
"maps_to": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.endothelial_cells",
"description": "Endothelial Cells observable. Maps to SBML symbol `E`."
},
{
"name": "state",
"maps_to": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.state",
"description": "Full raw SBML observable record for reproducibility and downstream visualisation."
},
{
"name": "summary",
"maps_to": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.summary",
"description": "Change and peak summary across the simulated SBML observables."
},
{
"name": "species_labels",
"maps_to": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.species_labels",
"description": "Mapping from selected raw SBML observable symbols to display labels."
}
]
},
"tags": [
"angiogenesis",
"biomodels_ebi",
"curated",
"faithful",
"microenvironment",
"oncology",
"physiology",
"sbml",
"systemsbiology",
"tumor-growth"
],
"title": "Yang2012 - cancer growth with angiogenesis Lab",
"models": [
{
"path": "models/core",
"alias": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model_state"
],
"from": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.state"
},
{
"to": [
"visualisation.oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model_summary"
],
"from": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.summary"
},
{
"to": [
"visualisation.oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model_species_labels"
],
"from": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.species_labels"
}
],
"package": "yang2012-cancer-growth-with-angiogenesis",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "The paper describes a model of tumor growth with angiogenesis. Created by COPASI 4.26 (Build 213) This model is described in the article: Mathematical modeling of solid cancer growth with angiogenesis.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packageyang2012-cancer-growth-with-angiogenesis
Created2026-05-16
Updated2026-06-13
angiogenesisbiomodels_ebicuratedfaithfulmicroenvironmentoncologyphysiologysbmlsystemsbiologytumor-growthvisualisationother