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Source-faithful physiology lab for Bond Graph CellML 2.0 models. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_main_x",
"label": "Initial Main X",
"maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.initial_main_x",
"description": "Initial value for Main X. Maps to source symbol `X`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.variable_labels"
},
{
"name": "main_x",
"label": "Main X",
"maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.main_x",
"description": "Main X. Maps to source symbol `X`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "main_f",
"label": "Main F",
"maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.main_f",
"description": "Main F. Maps to source symbol `F`. Units: C_per_mol. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "main_p1",
"label": "Main P1",
"maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.main_p1",
"description": "Main P1. Maps to source symbol `p1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "main_p2",
"label": "Main P2",
"maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.main_p2",
"description": "Main P2. Maps to source symbol `p2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_parameter_n_ai",
"label": "Model Parameter N Ai (source n_Ai)",
"maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.model_parameter_n_ai",
"description": "Model Parameter N Ai (source n_Ai). Maps to source symbol `n_Ai`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
},
{
"name": "model_parameter_n_ao",
"label": "Model Parameter N Ao (source n_Ao)",
"maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.model_parameter_n_ao",
"description": "Model Parameter N Ao (source n_Ao). Maps to source symbol `n_Ao`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
}
]
},
"title": "Physiome afe - Bond Graph Cellml 2 0 Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model",
"parameters": {
"model_path": "data/test_1.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_bond_graph_cellml_2_0_models_afe_model_state"
],
"from": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.state"
},
{
"to": [
"visualisation.physiology_cellml_bond_graph_cellml_2_0_models_afe_model_summary"
],
"from": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_bond_graph_cellml_2_0_models_afe_model_trajectory"
],
"from": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_bond_graph_cellml_2_0_models_afe_model_variable_labels"
],
"from": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.variable_labels"
}
],
"package": "physiomeafe-bond-graph-cellml-2-0",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Bond Graph CellML 2.0 models. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiomeafe-bond-graph-cellml-2-0
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother