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To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. It can be used to explore systemsbiology jol2012 yeastmetabolism efmanalysis model1201230000 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_zymst_c",
"label": "Initial Zymst C",
"maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.initial_zymst_c",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_zymst_c`."
},
{
"name": "initial_xu5p_d_c",
"label": "Initial Xu5p D C",
"maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.initial_xu5p_d_c",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_xu5p_DASH_D_c`."
},
{
"name": "initial_val_l_c",
"label": "Initial Val L C",
"maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.initial_val_l_c",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_val_DASH_L_c`."
},
{
"name": "initial_ump_c",
"label": "Initial Ump C",
"maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.initial_ump_c",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_ump_c`."
},
{
"name": "initial_tyr_l_c",
"label": "Initial Tyr L C",
"maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.initial_tyr_l_c",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_tyr_DASH_L_c`."
},
{
"name": "initial_trp_l_c",
"label": "Initial Trp L C",
"maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.initial_trp_l_c",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_trp_DASH_L_c`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.species_labels"
},
{
"name": "zymst_c",
"maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.zymst_c"
},
{
"name": "xu5p_d_c",
"maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.xu5p_d_c"
},
{
"name": "val_l_c",
"maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.val_l_c"
},
{
"name": "ump_c",
"maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.ump_c"
},
{
"name": "tyr_l_c",
"maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.tyr_l_c"
},
{
"name": "trp_l_c",
"maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.trp_l_c"
}
]
},
"tags": [
"metabolism",
"microbiology",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Jol2012 Yeastmetabolism Efmanalysis Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model_state"
],
"from": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model_summary"
],
"from": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model_species_labels"
],
"from": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.species_labels"
}
],
"package": "jol2012-yeastmetabolism-efmanalysis",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. It can be used to explore systemsbiology jol2012 yeastmetabolism efmanalysis model1201230000 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagejol2012-yeastmetabolism-efmanalysis
Created2026-05-17
Updated2026-06-13
metabolismmicrobiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother