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Cloutier2009 - Brain Energy Metabolism This model was taken from the CellMLrepository andautomatically converted to SBML. Following thesubmission the parameters are manually encoded and annotated assp.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_brain_energy_state_1",
"units": "native SBML value",
"default": 0.00599865999248041,
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.initial_brain_energy_state_1",
"description": "Initial condition for brain energy state 1. Maps to bundled SBML symbol `V_en_GLC`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_brain_energy_state_2",
"units": "native SBML value",
"default": 0.00600093047858717,
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.initial_brain_energy_state_2",
"description": "Initial condition for brain energy state 2. Maps to bundled SBML symbol `Vn_hk`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_brain_energy_state_3",
"units": "native SBML value",
"default": 0.00600284722882977,
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.initial_brain_energy_state_3",
"description": "Initial condition for brain energy state 3. Maps to bundled SBML symbol `Vn_pgi`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_brain_energy_state_4",
"units": "native SBML value",
"default": 0.1755,
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.initial_brain_energy_state_4",
"description": "Initial condition for brain energy state 4. Maps to bundled SBML symbol `NADg`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_brain_energy_state_5",
"units": "native SBML value",
"default": 0.13070953832961,
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.initial_brain_energy_state_5",
"description": "Initial condition for brain energy state 5. Maps to bundled SBML symbol `ADPg`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
}
],
"outputs": [
{
"name": "brain_energy_state_1",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.brain_energy_state_1"
},
{
"name": "brain_energy_state_2",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.brain_energy_state_2"
},
{
"name": "brain_energy_state_3",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.brain_energy_state_3"
},
{
"name": "brain_energy_state_4",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.brain_energy_state_4"
},
{
"name": "brain_energy_state_5",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.brain_energy_state_5"
},
{
"name": "observable_values",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.observable_values"
},
{
"name": "run_summary",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.run_summary"
},
{
"name": "observable_labels",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.observable_labels"
}
]
},
"title": "Cloutier2009 - Brain Energy Metabolism Lab",
"models": [
{
"path": "models/core",
"alias": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model",
"parameters": {
"model_path": "data/BIOMD0000000554.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model_observable_values"
],
"from": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.observable_values"
},
{
"to": [
"visualisation.metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model_run_summary"
],
"from": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.run_summary"
},
{
"to": [
"visualisation.metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model_observable_labels"
],
"from": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.observable_labels"
}
],
"package": "cloutier2009-brain-energy-metabolism",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "Cloutier2009 - Brain Energy Metabolism This model was taken from the CellMLrepository andautomatically converted to SBML. Following thesubmission the parameters are manually encoded and annotated assp.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagecloutier2009-brain-energy-metabolism
Created2026-05-15
Updated2026-06-13
biomodels_ebifaithfulmetabolismodesbmltelluriumvisualisationother