About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
Source-faithful physiology lab for The Physics of Physiology - Example 2: A mechanical system. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_q_1",
"label": "Initial Model State Q 1 (source q_1)",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.initial_model_state_q_1",
"description": "Initial value for Model State Q 1 (source q_1). Maps to source symbol `q_1`. Units: metre. Naming evidence: source symbol is too ambiguous for a stronger public label.",
"accepted_units": [
"metre"
]
},
{
"name": "initial_model_state_v_1",
"label": "Initial Model State V 1 (source v_1)",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.initial_model_state_v_1",
"description": "Initial value for Model State V 1 (source v_1). Maps to source symbol `v_1`. Units: m_per_s. Naming evidence: source symbol is too ambiguous for a stronger public label.",
"accepted_units": [
"m_per_s"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.variable_labels"
},
{
"name": "model_state_q_1",
"label": "Model State Q 1 (source q_1)",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.model_state_q_1",
"description": "Model State Q 1 (source q_1). Maps to source symbol `q_1`. Units: metre. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_v_1",
"label": "Model State V 1 (source v_1)",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.model_state_v_1",
"description": "Model State V 1 (source v_1). Maps to source symbol `v_1`. Units: m_per_s. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "main_c",
"label": "Main C",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.main_c",
"description": "Main C. Maps to source symbol `C`. Units: m2_per_J. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "main_l",
"label": "Main L",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.main_l",
"description": "Main L. Maps to source symbol `L`. Units: Js2_per_m2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "main_r",
"label": "Main R",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.main_r",
"description": "Main R. Maps to source symbol `R`. Units: Js_per_m2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_variable_a_1",
"label": "Model Variable A 1 (source a_1)",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.model_variable_a_1",
"description": "Model Variable A 1 (source a_1). Maps to source symbol `a_1`. Units: m_per_s2. Naming evidence: source symbol is too ambiguous for a stronger public label."
}
]
},
"title": "Physiome aee - Physics Example 2 Mechanical System Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model",
"parameters": {
"model_path": "data/FAIRDO_BG_example_3.2.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model_state"
],
"from": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.state"
},
{
"to": [
"visualisation.physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model_summary"
],
"from": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model_trajectory"
],
"from": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model_variable_labels"
],
"from": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.variable_labels"
}
],
"package": "physiomeaee-physics-example-2-mechanical-system",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for The Physics of Physiology - Example 2: A mechanical system. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiomeaee-physics-example-2-mechanical-system
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother