Salem2002 - Mechanistic Myocardial Energy Metabolism Under Normal Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_glycogen",
        "label": "Initial Glycogen",
        "maps_to": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.initial_glycogen",
        "description": "Initial value for Glycogen. Maps to source symbol `GY`. Units: umol_per_g. Naming evidence: source metadata names `GY` as `glycogen`.",
        "accepted_units": [
          "umol_per_g"
        ]
      },
      {
        "name": "initial_glucose_6_phosphate",
        "label": "Initial Glucose 6 Phosphate",
        "maps_to": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.initial_glucose_6_phosphate",
        "description": "Initial value for Glucose 6 Phosphate. Maps to source symbol `GP`. Units: umol_per_g. Naming evidence: source metadata names `GP` as `glucose-6-phosphate`.",
        "accepted_units": [
          "umol_per_g"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.variable_labels"
      },
      {
        "name": "oxygen",
        "label": "Oxygen",
        "maps_to": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.oxygen",
        "description": "Oxygen. Maps to source symbol `O2`. Units: umol_per_g. Naming evidence: source metadata names `O2` as `oxygen`."
      },
      {
        "name": "adp_concentration",
        "label": "ADP Concentration",
        "maps_to": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.adp_concentration",
        "description": "ADP Concentration. Maps to source symbol `ADP`. Units: umol_per_g. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "atp_concentration",
        "label": "ATP Concentration",
        "maps_to": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.atp_concentration",
        "description": "ATP Concentration. Maps to source symbol `ATP`. Units: umol_per_g. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "acetyl_co_a",
        "label": "Acetyl Co A",
        "maps_to": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.acetyl_co_a",
        "description": "Acetyl Co A. Maps to source symbol `AC`. Units: umol_per_g. Naming evidence: source metadata names `AC` as `acetyl-CoA`."
      },
      {
        "name": "carbon_dioxide",
        "label": "Carbon Dioxide",
        "maps_to": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.carbon_dioxide",
        "description": "Carbon Dioxide. Maps to source symbol `CO2`. Units: umol_per_g. Naming evidence: source metadata names `CO2` as `carbon dioxide`."
      },
      {
        "name": "remainder_of_the_co_a_species",
        "label": "Remainder Of The Co A Species",
        "maps_to": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.remainder_of_the_co_a_species",
        "description": "Remainder Of The Co A Species. Maps to source symbol `CoA_pool`. Units: umol_per_g. Naming evidence: source metadata names `CoA_pool` as `remainder of the CoA species`."
      }
    ]
  },
  "title": "Salem2002 - Mechanistic Myocardial Energy Metabolism Under Normal Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model",
      "parameters": {
        "model_path": "data/salem_saidel_stanley_cabrera_2002.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model_state"
      ],
      "from": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model_summary"
      ],
      "from": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model_trajectory"
      ],
      "from": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model_variable_labels"
      ],
      "from": "physiology_cellml_salem_saidel_stanley_cabrera_2002_salemsaidelstanleycabrera2002_model.variable_labels"
    }
  ],
  "package": "salem2002-mechanistic-myocardial-energy-metabolism-under-normal",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.1",
  "description": "Source-faithful physiology lab for Salem, Saidel, Stanley, Cabrera, 2002. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.",
  "schema_version": "2.0"
}