About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
Source-faithful physiology lab for Hunt, Tilunaite, Bass, Soeller, Roderick, Rajagopal, Crampin. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_intracellular_calcium",
"label": "Initial Intracellular Calcium",
"maps_to": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.initial_intracellular_calcium",
"description": "Initial value for Intracellular Calcium. Maps to source symbol `Ca_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mM"
]
},
{
"name": "initial_alphabeta_h",
"label": "Initial Alphabeta H",
"maps_to": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.initial_alphabeta_h",
"description": "Initial value for Alphabeta H. Maps to source symbol `h`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.variable_labels"
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `V`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "calcium_conductance_g_ca_b",
"label": "Calcium Conductance G Ca B",
"maps_to": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.calcium_conductance_g_ca_b",
"description": "Calcium Conductance G Ca B. Maps to source symbol `g_CaB`. Units: mM_per_mV_ms. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "calcium_current",
"label": "Calcium Current",
"maps_to": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.calcium_current",
"description": "Calcium Current. Maps to source symbol `I_pCa`. Units: mM_per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "calcium_current_i_ca_b",
"label": "Calcium Current I Ca B",
"maps_to": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.calcium_current_i_ca_b",
"description": "Calcium Current I Ca B. Maps to source symbol `I_CaB`. Units: mM_per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "calcium_reversal_potential",
"label": "Calcium Reversal Potential",
"maps_to": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.calcium_reversal_potential",
"description": "Calcium Reversal Potential. Maps to source symbol `E_Ca`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_calcium",
"label": "Intracellular Calcium",
"maps_to": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.intracellular_calcium",
"description": "Intracellular Calcium. Maps to source symbol `Ca_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Physiome 5ee - Hunt Tilunaite Bass Soeller Roderick Rajagopal Crampin Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model",
"parameters": {
"model_path": "data/Hunt_et_al_ECC_ETC_calcium_dynamics_cytosol.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model_state"
],
"from": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.state"
},
{
"to": [
"visualisation.physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model_summary"
],
"from": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model_trajectory"
],
"from": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model_variable_labels"
],
"from": "physiology_cellml_hunt_tilunaite_bass_soeller_roderick_rajagopal_c_5ee_model.variable_labels"
}
],
"package": "physiome5ee-hunt-tilunaite-bass-soeller-roderick-rajago-03c1ef4e",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Hunt, Tilunaite, Bass, Soeller, Roderick, Rajagopal, Crampin. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiome5ee-hunt-tilunaite-bass-soeller-roderick-rajago-03c1ef4e
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother