Rong2009 - Modeling Latently Infected Cell Activation Viral Latent Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_latently_infected_l",
        "label": "Initial Latently Infected L",
        "maps_to": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.initial_latently_infected_l",
        "description": "Initial value for Latently Infected L. Maps to source symbol `L`. Units: per_ml. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "per_ml"
        ]
      },
      {
        "name": "initial_uninfected_t",
        "label": "Initial Uninfected T",
        "maps_to": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.initial_uninfected_t",
        "description": "Initial value for Uninfected T. Maps to source symbol `T`. Units: per_ml. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "per_ml"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.variable_labels"
      },
      {
        "name": "efficacy",
        "label": "Efficacy",
        "maps_to": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.efficacy",
        "description": "Efficacy. Maps to source symbol `efficacy`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "latently_infected_l",
        "label": "Latently Infected L",
        "maps_to": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.latently_infected_l",
        "description": "Latently Infected L. Maps to source symbol `L`. Units: per_ml. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "uninfected_t",
        "label": "Uninfected T",
        "maps_to": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.uninfected_t",
        "description": "Uninfected T. Maps to source symbol `T`. Units: per_ml. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "viral_quantity_v",
        "label": "Viral Quantity V (source V)",
        "maps_to": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.viral_quantity_v",
        "description": "Viral Quantity V (source V). Maps to source symbol `V`. Units: per_ml. Naming evidence: viral/infection context supports a conservative viral quantity label."
      },
      {
        "name": "t_star",
        "label": "T Star",
        "maps_to": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.t_star",
        "description": "T Star. Maps to source symbol `T_star`. Units: per_ml. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "delta",
        "label": "Delta",
        "maps_to": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.delta",
        "description": "Delta. Maps to source symbol `delta`. Units: per_day. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Rong2009 - Modeling Latently Infected Cell Activation Viral Latent Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_rong_perelson_2009_rongperelson2009_model",
      "parameters": {
        "model_path": "data/rong_2009a.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_rong_perelson_2009_rongperelson2009_model_state"
      ],
      "from": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_rong_perelson_2009_rongperelson2009_model_summary"
      ],
      "from": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_rong_perelson_2009_rongperelson2009_model_trajectory"
      ],
      "from": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_rong_perelson_2009_rongperelson2009_model_variable_labels"
      ],
      "from": "physiology_cellml_rong_perelson_2009_rongperelson2009_model.variable_labels"
    }
  ],
  "package": "rong2009-modeling-latently-infected-cell-activation-viral-latent",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Rong, Perelson 2009. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}