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LlorénsRico2016 - Effects of cis-Encoded antisense RNAs (asRNAs) - Case1 Three putative effects of the asRNAs were considered in this study: in case 1 (this model) , the binding of the asRNA to the co. It can be used to explore systemsbiology llor nsrico2016 effects of cis dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_rib",
"label": "Initial Model State Rib",
"maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.initial_model_state_rib",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `rib`."
},
{
"name": "initial_protein",
"label": "Initial Protein",
"maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.initial_protein",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `protein`."
},
{
"name": "initial_mrna",
"label": "Initial MRNA",
"maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.initial_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mrna`."
},
{
"name": "initial_asrna",
"label": "Initial Asrna",
"maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.initial_asrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `asrna`."
},
{
"name": "initial_mrnarib",
"label": "Initial Mrnarib",
"maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.initial_mrnarib",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mrnarib`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.species_labels"
},
{
"name": "rib",
"maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.rib"
},
{
"name": "protein",
"maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.protein"
},
{
"name": "mrna",
"maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.mrna"
},
{
"name": "asrna",
"maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.asrna"
},
{
"name": "mrnarib",
"maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.mrnarib"
}
]
},
"tags": [
"generegulation",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Llorensrico2016 Effects Of Cis Encoded Antisense Rnas Case1 Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model_state"
],
"from": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model_summary"
],
"from": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model_species_labels"
],
"from": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170000_model.species_labels"
}
],
"package": "llorensrico2016-effects-of-cis-encoded-antisense-rnas-case1",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "LlorénsRico2016 - Effects of cis-Encoded antisense RNAs (asRNAs) - Case1 Three putative effects of the asRNAs were considered in this study: in case 1 (this model) , the binding of the asRNA to the co. It can be used to explore systemsbiology llor nsrico2016 effects of cis dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagellorensrico2016-effects-of-cis-encoded-antisense-rnas-case1
Created2026-05-17
Updated2026-06-13
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother