Varusai2018 - Dynamic modelling of the mTOR signalling network reveals complex emergent behaviours conferred by DEPTOR Lab
About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
Clean Biosimulant lab for systems signaling model: Varusai2018 - Dynamic modelling of the mTOR signalling network reveals complex emergent behaviours conferred by DEPTOR. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_insulin_receptor",
"label": "Initial insulin receptor",
"maps_to": "signaling_sbml_varusai2018_dynamic_modelling_of_the_mtor_signal_biomd0000000823_model.initial_insulin_receptor",
"description": "Initial level of insulin receptor. Maps to SBML symbol `IR`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "akt",
"label": "AKT",
"maps_to": "signaling_sbml_varusai2018_dynamic_modelling_of_the_mtor_signal_biomd0000000823_model.akt",
"description": "AKT. Maps to SBML symbol `Akt` and is emitted in native SBML units."
},
{
"name": "source_defined_pakt_state",
"label": "source-defined PAKT state",
"maps_to": "signaling_sbml_varusai2018_dynamic_modelling_of_the_mtor_signal_biomd0000000823_model.source_defined_pakt_state",
"description": "source-defined PAKT state. Maps to SBML symbol `pAkt` and is emitted in native SBML units."
},
{
"name": "source_defined_pir_state",
"label": "source-defined PIR state",
"maps_to": "signaling_sbml_varusai2018_dynamic_modelling_of_the_mtor_signal_biomd0000000823_model.source_defined_pir_state",
"description": "source-defined PIR state. Maps to SBML symbol `pIR` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_varusai2018_dynamic_modelling_of_the_mtor_signal_biomd0000000823_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_varusai2018_dynamic_modelling_of_the_mtor_signal_biomd0000000823_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_varusai2018_dynamic_modelling_of_the_mtor_signal_biomd0000000823_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"mtor",
"gpcr"
],
"title": "Varusai2018 - Dynamic modelling of the mTOR signalling network reveals complex emergent behaviours conferred by DEPTOR Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_varusai2018_dynamic_modelling_of_the_mtor_signal_biomd0000000823_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_varusai2018_dynamic_modelling_of_the_mtor_signal_biomd0000000823_model_state"
],
"from": "signaling_sbml_varusai2018_dynamic_modelling_of_the_mtor_signal_biomd0000000823_model.state"
},
{
"to": [
"visualisation.signaling_sbml_varusai2018_dynamic_modelling_of_the_mtor_signal_biomd0000000823_model_summary"
],
"from": "signaling_sbml_varusai2018_dynamic_modelling_of_the_mtor_signal_biomd0000000823_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_varusai2018_dynamic_modelling_of_the_mtor_signal_biomd0000000823_model_species_labels"
],
"from": "signaling_sbml_varusai2018_dynamic_modelling_of_the_mtor_signal_biomd0000000823_model.species_labels"
}
],
"package": "varusai2018-dynamic-modelling-of-the-mtor-signal",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Varusai2018 - Dynamic modelling of the mTOR signalling network reveals complex emergent behaviours conferred by DEPTOR. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagevarusai2018-dynamic-modelling-of-the-mtor-signal
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimtorgpcrvisualisationother