Elowitz2000 - Synthetic Oscillatory Network Transcriptional Regulators Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_m_tet_r",
        "label": "Initial M Tet R",
        "maps_to": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.initial_m_tet_r",
        "description": "Initial value for M Tet R. Maps to source symbol `M_tetR`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_model_state_m_cl",
        "label": "Initial Model State M Cl (source M_cl)",
        "maps_to": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.initial_model_state_m_cl",
        "description": "Initial value for Model State M Cl (source M_cl). Maps to source symbol `M_cl`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.variable_labels"
      },
      {
        "name": "m_tet_r",
        "label": "M Tet R",
        "maps_to": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.m_tet_r",
        "description": "M Tet R. Maps to source symbol `M_tetR`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_state_m_cl",
        "label": "Model State M Cl (source M_cl)",
        "maps_to": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.model_state_m_cl",
        "description": "Model State M Cl (source M_cl). Maps to source symbol `M_cl`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_state_p_cl",
        "label": "Model State P Cl (source P_cl)",
        "maps_to": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.model_state_p_cl",
        "description": "Model State P Cl (source P_cl). Maps to source symbol `P_cl`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "p_tet_r",
        "label": "P Tet R",
        "maps_to": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.p_tet_r",
        "description": "P Tet R. Maps to source symbol `P_tetR`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "m_lacl",
        "label": "M Lacl",
        "maps_to": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.m_lacl",
        "description": "M Lacl. Maps to source symbol `M_lacl`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "p_lacl",
        "label": "P Lacl",
        "maps_to": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.p_lacl",
        "description": "P Lacl. Maps to source symbol `P_lacl`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Elowitz2000 - Synthetic Oscillatory Network Transcriptional Regulators Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model",
      "parameters": {
        "model_path": "data/elowitz_leibler_2000.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model_state"
      ],
      "from": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model_summary"
      ],
      "from": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model_trajectory"
      ],
      "from": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model_variable_labels"
      ],
      "from": "physiology_cellml_elowitz_leibler_2000_elowitzleibler2000_model.variable_labels"
    }
  ],
  "package": "elowitz2000-synthetic-oscillatory-network-transcription-492c7d57",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Elowitz, Leibler, 2000. Public controls and outputs are mapped to real source symbols for oscillatory physiology.",
  "schema_version": "2.0"
}