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Source-faithful physiology lab for Stern, Song, Sham, Yang, Boheler, Rios, 1999. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_calcium_release_channel_state_ri",
"label": "Initial Calcium Release Channel State Ri (source RI)",
"maps_to": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.initial_calcium_release_channel_state_ri",
"description": "Initial value for Calcium Release Channel State Ri (source RI). Maps to source symbol `RI`. Units: dimensionless. Naming evidence: cardiac excitation-contraction context supports a conservative calcium-release-channel state label.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_receptor",
"label": "Initial Receptor",
"maps_to": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.initial_receptor",
"description": "Initial value for Receptor. Maps to source symbol `R`. Units: dimensionless. Naming evidence: source metadata names `R` as `Receptor`.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.variable_labels"
},
{
"name": "calcium_release_channel_state_ri",
"label": "Calcium Release Channel State Ri (source RI)",
"maps_to": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.calcium_release_channel_state_ri",
"description": "Calcium Release Channel State Ri (source RI). Maps to source symbol `RI`. Units: dimensionless. Naming evidence: cardiac excitation-contraction context supports a conservative calcium-release-channel state label."
},
{
"name": "calcium_concentration",
"label": "Calcium Concentration",
"maps_to": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.calcium_concentration",
"description": "Calcium Concentration. Maps to source symbol `Ca`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_potassium",
"label": "Intracellular Potassium",
"maps_to": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.intracellular_potassium",
"description": "Intracellular Potassium. Maps to source symbol `ki`. Units: second_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "receptor",
"label": "Receptor",
"maps_to": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.receptor",
"description": "Receptor. Maps to source symbol `R`. Units: dimensionless. Naming evidence: source metadata names `R` as `Receptor`."
},
{
"name": "inactive_state",
"label": "Inactive State",
"maps_to": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.inactive_state",
"description": "Inactive State. Maps to source symbol `I`. Units: dimensionless. Naming evidence: source metadata names `I` as `Inactive state`."
},
{
"name": "open_state",
"label": "Open State",
"maps_to": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.open_state",
"description": "Open State. Maps to source symbol `O`. Units: dimensionless. Naming evidence: source metadata names `O` as `Open state`."
}
]
},
"title": "Stern1999 - Local Control Cardiac Excitation Contraction Coupling Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model",
"parameters": {
"model_path": "data/stern_song_sham_yang_boheler_rios_1999.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model_state"
],
"from": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.state"
},
{
"to": [
"visualisation.physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model_summary"
],
"from": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model_trajectory"
],
"from": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model_variable_labels"
],
"from": "physiology_cellml_stern_song_sham_yang_boheler_rios_1999_sternsongshamyangbohelerrios1999_model.variable_labels"
}
],
"package": "stern1999-local-control-cardiac-excitation-contraction-coupling",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.1",
"description": "Source-faithful physiology lab for Stern, Song, Sham, Yang, Boheler, Rios, 1999. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagestern1999-local-control-cardiac-excitation-contraction-coupling
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother