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One published Lab
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Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
The model should reproduce the figure 1C of the article (successfully reproduced in MathSBML). If your software does not support the variable 'time', you can replace the assignmentRule: n = n0 * [ exp.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ca_er",
"label": "Initial Ca Er",
"maps_to": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.initial_ca_er",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaER`."
},
{
"name": "initial_ca_cyt",
"label": "Initial Ca Cyt",
"maps_to": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.initial_ca_cyt",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_Cyt`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.species_labels"
},
{
"name": "ca_er",
"maps_to": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.ca_er"
},
{
"name": "ca_cyt",
"maps_to": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.ca_cyt"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Oxhamre2005 Ca Oscillation Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model_state"
],
"from": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model_summary"
],
"from": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model_species_labels"
],
"from": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.species_labels"
}
],
"package": "oxhamre2005-ca-oscillation",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "The model should reproduce the figure 1C of the article (successfully reproduced in MathSBML). If your software does not support the variable 'time', you can replace the assignmentRule: n = n0 * [ exp.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageoxhamre2005-ca-oscillation
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother