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Source-faithful physiology lab for Wodarz, Nowak, 1999. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ctl_effectors",
"label": "Initial CTL Effectors",
"maps_to": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.initial_ctl_effectors",
"description": "Initial value for CTL Effectors. Maps to source symbol `z`. Units: per_mm3. Naming evidence: source metadata names `z` as `CTL effectors`.",
"accepted_units": [
"per_mm3"
]
},
{
"name": "initial_infected_cd4_t_cells",
"label": "Initial Infected CD4 T Cells",
"maps_to": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.initial_infected_cd4_t_cells",
"description": "Initial value for Infected CD4 T Cells. Maps to source symbol `y`. Units: per_mm3. Naming evidence: source metadata names `y` as `infected CD4 T cells`.",
"accepted_units": [
"per_mm3"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.variable_labels"
},
{
"name": "ctl_effectors",
"label": "CTL Effectors",
"maps_to": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.ctl_effectors",
"description": "CTL Effectors. Maps to source symbol `z`. Units: per_mm3. Naming evidence: source metadata names `z` as `CTL effectors`."
},
{
"name": "infected_cd4_t_cells",
"label": "Infected CD4 T Cells",
"maps_to": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.infected_cd4_t_cells",
"description": "Infected CD4 T Cells. Maps to source symbol `y`. Units: per_mm3. Naming evidence: source metadata names `y` as `infected CD4 T cells`."
},
{
"name": "uninfected_cd4_t_cells",
"label": "Uninfected CD4 T Cells",
"maps_to": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.uninfected_cd4_t_cells",
"description": "Uninfected CD4 T Cells. Maps to source symbol `x`. Units: per_mm3. Naming evidence: source metadata names `x` as `uninfected CD4 T cells`."
},
{
"name": "cytotoxic_t_lymphocyte_precursors",
"label": "Cytotoxic T Lymphocyte Precursors",
"maps_to": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.cytotoxic_t_lymphocyte_precursors",
"description": "Cytotoxic T Lymphocyte Precursors. Maps to source symbol `w`. Units: per_mm3. Naming evidence: source metadata names `w` as `cytotoxic T lymphocyte precursors`."
},
{
"name": "beta",
"label": "Beta",
"maps_to": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.beta",
"description": "Beta. Maps to source symbol `beta`. Units: mm3_per_day. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "kinetic_parameters_c",
"label": "Kinetic Parameters C",
"maps_to": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.kinetic_parameters_c",
"description": "Kinetic Parameters C. Maps to source symbol `c`. Units: mm3_mm3_per_day. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Wodarz1999 - Nowak Mathematical Immunological Control Hiv Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model",
"parameters": {
"model_path": "data/wodarz_nowak_1999.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model_state"
],
"from": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.state"
},
{
"to": [
"visualisation.physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model_summary"
],
"from": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model_trajectory"
],
"from": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model_variable_labels"
],
"from": "physiology_cellml_wodarz_nowak_1999_wodarznowak1999_model.variable_labels"
}
],
"package": "wodarz1999-nowak-mathematical-immunological-control-hiv",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Wodarz, Nowak, 1999. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagewodarz1999-nowak-mathematical-immunological-control-hiv
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother