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Single-model lab wrapper for Qu2003_CellCycle. This model is from the article: Dynamics of the cell cycle: checkpoints, sizers, and timers. It can be used to explore cell-cycle regulation dynamics and compare checkpoint behavior across conditions.
Manifest
{
"io": {
"inputs": [],
"outputs": [
{
"name": "inactive_cyclin_cdk_complex",
"label": "Inactive Cyclin:CDK Complex",
"maps_to": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.inactive_cyclin_cdk_complex",
"description": "Tracks Inactive Cyclin:CDK Complex in the lab model via `cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.inactive_cyclin_cdk_complex`."
},
{
"name": "active_cyclin_cdk_complex",
"label": "Active Cyclin:CDK Complex",
"maps_to": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.active_cyclin_cdk_complex",
"description": "Tracks Active Cyclin:CDK Complex in the lab model via `cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.active_cyclin_cdk_complex`."
},
{
"name": "total_cdk",
"label": "Total CDK",
"maps_to": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.total_cdk",
"description": "Tracks Total CDK in the lab model via `cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.total_cdk`."
},
{
"name": "unphosphorylated_cdc25",
"label": "Unphosphorylated Cdc25",
"maps_to": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.unphosphorylated_cdc25",
"description": "Tracks Unphosphorylated Cdc25 in the lab model via `cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.unphosphorylated_cdc25`."
},
{
"name": "one_site_phosphorylated_cdc25",
"label": "One Site Phosphorylated Cdc25",
"maps_to": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.one_site_phosphorylated_cdc25",
"description": "Tracks One Site Phosphorylated Cdc25 in the lab model via `cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.one_site_phosphorylated_cdc25`."
},
{
"name": "two_site_phosphorylated_cdc25",
"label": "Two Site Phosphorylated Cdc25",
"maps_to": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.two_site_phosphorylated_cdc25",
"description": "Tracks Two Site Phosphorylated Cdc25 in the lab model via `cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.two_site_phosphorylated_cdc25`."
},
{
"name": "unphosphorylated_wee1",
"label": "Unphosphorylated Wee1",
"maps_to": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.unphosphorylated_wee1",
"description": "Tracks Unphosphorylated Wee1 in the lab model via `cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.unphosphorylated_wee1`."
},
{
"name": "phosphorylated_wee1",
"label": "Phosphorylated Wee1",
"maps_to": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.phosphorylated_wee1",
"description": "Tracks Phosphorylated Wee1 in the lab model via `cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.phosphorylated_wee1`."
},
{
"name": "active_skp2_or_apc_c_c",
"label": "Active SKP2 Or APC/C/C",
"maps_to": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.active_skp2_or_apc_c_c",
"description": "Tracks Active SKP2 Or APC/C/C in the lab model via `cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.active_skp2_or_apc_c_c`."
},
{
"name": "free_cki",
"label": "Free CKI",
"maps_to": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.free_cki",
"description": "Tracks Free CKI in the lab model via `cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.free_cki`."
},
{
"name": "cyclin_cdk_cki_complex_with_cki_unphosphorylated",
"label": "Cyclin:CDK:CKI Complex With CKI Unphosphorylated",
"maps_to": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.cyclin_cdk_cki_complex_with_cki_unphosphorylated",
"description": "Tracks Cyclin:CDK:CKI Complex With CKI Unphosphorylated in the lab model via `cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.cyclin_cdk_cki_complex_with_cki_unphosphorylated`."
},
{
"name": "cyclin_cdk_cki_complex_with_cki_phosphorylated",
"label": "Cyclin:CDK:CKI Complex With CKI Phosphorylated",
"maps_to": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.cyclin_cdk_cki_complex_with_cki_phosphorylated",
"description": "Tracks Cyclin:CDK:CKI Complex With CKI Phosphorylated in the lab model via `cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.cyclin_cdk_cki_complex_with_cki_phosphorylated`."
},
{
"name": "free_cyclin",
"label": "Free Cyclin",
"maps_to": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.free_cyclin",
"description": "Tracks Free Cyclin in the lab model via `cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.free_cyclin`."
},
{
"name": "free_cdk",
"label": "Free CDK",
"maps_to": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.free_cdk",
"description": "Tracks Free CDK in the lab model via `cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.free_cdk`."
},
{
"name": "total_cyclin",
"label": "Total Cyclin",
"maps_to": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.total_cyclin",
"description": "Tracks Total Cyclin in the lab model via `cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.total_cyclin`."
}
]
},
"title": "Qu2003_CellCycle Lab",
"models": [
{
"path": "models/core",
"alias": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model_state"
],
"from": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.state"
},
{
"to": [
"visualisation.cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model_summary"
],
"from": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.summary"
},
{
"to": [
"visualisation.cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model_species_labels"
],
"from": "cellcycle_sbml_qu2003_cellcycle_biomd0000000110_model.species_labels"
}
],
"package": "qu2003-cell-cycle-models-cellcycle",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "Single-model lab wrapper for Qu2003_CellCycle. This model is from the article: Dynamics of the cell cycle: checkpoints, sizers, and timers. It can be used to explore cell-cycle regulation dynamics and compare checkpoint behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagequ2003-cell-cycle-models-cellcycle
Created2026-05-15
Updated2026-06-13
cellcyclesbmlbiomodels_ebifaithfulvisualisationother