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B. subtilis sigma-B post-transcriptional instability. Liebal2012 - B.subtilis post-transcription instability model An important transcription factor of B.subsilis is sigma B . It can be used to explore generegulation liebal2012 b subtilis post transcriptional dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "iptg",
"label": "IPTG",
"maps_to": "liebal2012_sigb_post_transcription.iptg",
"description": "Boundary species `IPTG`, the source induction level for this sigma-B model variant."
}
],
"outputs": [
{
"name": "sigma_b",
"maps_to": "liebal2012_sigb_post_transcription.sigma_b"
},
{
"name": "lacz_reporter",
"maps_to": "liebal2012_sigb_post_transcription.lacz_reporter"
},
{
"name": "model_state_x",
"maps_to": "liebal2012_sigb_post_transcription.model_state_x"
},
{
"name": "state",
"maps_to": "liebal2012_sigb_post_transcription.state"
},
{
"name": "summary",
"maps_to": "liebal2012_sigb_post_transcription.summary"
},
{
"name": "species_labels",
"maps_to": "liebal2012_sigb_post_transcription.species_labels"
}
]
},
"title": "Liebal2012 Sigb Post Transcription Lab",
"models": [
{
"path": "models/core",
"alias": "liebal2012_sigb_post_transcription",
"parameters": {
"model_path": "data/BIOMD0000000459.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.liebal2012_sigb_post_transcription_sigma_b"
],
"from": "liebal2012_sigb_post_transcription.sigma_b"
},
{
"to": [
"visualisation.liebal2012_sigb_post_transcription_lacz_reporter"
],
"from": "liebal2012_sigb_post_transcription.lacz_reporter"
},
{
"to": [
"visualisation.liebal2012_sigb_post_transcription_model_state_x"
],
"from": "liebal2012_sigb_post_transcription.model_state_x"
},
{
"to": [
"visualisation.liebal2012_sigb_post_transcription_state"
],
"from": "liebal2012_sigb_post_transcription.state"
},
{
"to": [
"visualisation.liebal2012_sigb_post_transcription_summary"
],
"from": "liebal2012_sigb_post_transcription.summary"
},
{
"to": [
"visualisation.liebal2012_sigb_post_transcription_species_labels"
],
"from": "liebal2012_sigb_post_transcription.species_labels"
}
],
"package": "liebal2012-sigb-post-transcription",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.1",
"description": "B. subtilis sigma-B post-transcriptional instability. Liebal2012 - B.subtilis post-transcription instability model An important transcription factor of B.subsilis is sigma B . It can be used to explore generegulation liebal2012 b subtilis post transcriptional dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packageliebal2012-sigb-post-transcription
Created2026-05-15
Updated2026-06-13
generegulationsbmlbiomodels_ebifaithfulvisualisationother