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Final version obtained by merging of the PhyA_FHL model with On_OFF 9h long experiment This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/bio. It can be used to explore systemsbiology sorokina2009 phya fhl on off dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_n_luc",
"label": "Initial N Luc",
"maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.initial_n_luc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `nLuc`."
},
{
"name": "initial_n_luc_2",
"label": "Initial N Luc 2",
"maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.initial_n_luc_2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `nLUC`."
},
{
"name": "initial_pr_pif3",
"label": "Initial Pr Pif3",
"maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.initial_pr_pif3",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pr_PIF3`."
},
{
"name": "initial_pr_gbd_f",
"label": "Initial Pr Gbd F",
"maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.initial_pr_gbd_f",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pr_GBD_f`."
},
{
"name": "initial_pfr_pif3",
"label": "Initial Pfr Pif3",
"maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.initial_pfr_pif3",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pfr_PIF3`."
},
{
"name": "initial_pfr_gbd_f",
"label": "Initial Pfr Gbd F",
"maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.initial_pfr_gbd_f",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pfr_GBD_f`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.species_labels"
},
{
"name": "n_luc",
"maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.n_luc"
},
{
"name": "n_luc_2",
"maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.n_luc_2"
},
{
"name": "pr_pif3",
"maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.pr_pif3"
},
{
"name": "pr_gbd_f",
"maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.pr_gbd_f"
},
{
"name": "pfr_pif3",
"maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.pfr_pif3"
},
{
"name": "pfr_gbd_f",
"maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.pfr_gbd_f"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Sorokina2009 Phya Fhl On Off 9h Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model_state"
],
"from": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model_summary"
],
"from": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model_species_labels"
],
"from": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.species_labels"
}
],
"package": "sorokina2009-phya-fhl-on-off-9h",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Final version obtained by merging of the PhyA_FHL model with On_OFF 9h long experiment This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/bio. It can be used to explore systemsbiology sorokina2009 phya fhl on off dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesorokina2009-phya-fhl-on-off-9h
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother