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Locke2005 - Circadian Clock SBML model of the interlocked feedback loop network The model describes the circuit depicted in Fig. 4 and reproduces the simulations in Figure 5A and 5B.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_toc1_protein_in_cytoplasm",
"label": "Initial Toc1 Protein In Cytoplasm",
"maps_to": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.initial_toc1_protein_in_cytoplasm",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cTc`."
},
{
"name": "initial_x_protein_in_cytoplasm",
"label": "Initial X Protein In Cytoplasm",
"maps_to": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.initial_x_protein_in_cytoplasm",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cXc`."
},
{
"name": "initial_light_sensitive_protein_p",
"label": "Initial Light Sensitive Protein P",
"maps_to": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.initial_light_sensitive_protein_p",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cPn`."
},
{
"name": "initial_lhy_mrna",
"label": "Initial Lhy MRNA",
"maps_to": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.initial_lhy_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cLm`."
},
{
"name": "initial_toc1_mrna",
"label": "Initial Toc1 MRNA",
"maps_to": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.initial_toc1_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cTm`."
},
{
"name": "initial_x_protein_in_nucleus",
"label": "Initial X Protein In Nucleus",
"maps_to": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.initial_x_protein_in_nucleus",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cXn`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.species_labels"
},
{
"name": "toc1_protein_in_cytoplasm",
"maps_to": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.toc1_protein_in_cytoplasm"
},
{
"name": "x_protein_in_cytoplasm",
"maps_to": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.x_protein_in_cytoplasm"
},
{
"name": "light_sensitive_protein_p",
"maps_to": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.light_sensitive_protein_p"
},
{
"name": "lhy_mrna",
"maps_to": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.lhy_mrna"
},
{
"name": "toc1_mrna",
"maps_to": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.toc1_mrna"
},
{
"name": "x_protein_in_nucleus",
"maps_to": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.x_protein_in_nucleus"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Locke2005 Circadian Clock Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model_state"
],
"from": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model_summary"
],
"from": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model_species_labels"
],
"from": "systemsbiology_sbml_locke2005_circadian_clock_biomd0000000055_model.species_labels"
}
],
"package": "locke2005-circadian-clock",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Locke2005 - Circadian Clock SBML model of the interlocked feedback loop network The model describes the circuit depicted in Fig. 4 and reproduces the simulations in Figure 5A and 5B.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagelocke2005-circadian-clock
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother