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Source-faithful physiology lab for Egli, Bertram, Sellix, Freeman, 2004. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_dopamine",
"label": "Initial Dopamine",
"maps_to": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.initial_dopamine",
"description": "Initial value for Dopamine. Maps to source symbol `DA`. Units: nanog_ml. Naming evidence: source metadata names `DA` as `dopamine`.",
"accepted_units": [
"nanog_ml"
]
},
{
"name": "initial_oxytocin",
"label": "Initial Oxytocin",
"maps_to": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.initial_oxytocin",
"description": "Initial value for Oxytocin. Maps to source symbol `OT`. Units: picog_ml. Naming evidence: source metadata names `OT` as `oxytocin`.",
"accepted_units": [
"picog_ml"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.variable_labels"
},
{
"name": "dopamine",
"label": "Dopamine",
"maps_to": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.dopamine",
"description": "Dopamine. Maps to source symbol `DA`. Units: nanog_ml. Naming evidence: source metadata names `DA` as `dopamine`."
},
{
"name": "oxytocin",
"label": "Oxytocin",
"maps_to": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.oxytocin",
"description": "Oxytocin. Maps to source symbol `OT`. Units: picog_ml. Naming evidence: source metadata names `OT` as `oxytocin`."
},
{
"name": "prolactin",
"label": "Prolactin",
"maps_to": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.prolactin",
"description": "Prolactin. Maps to source symbol `PRL`. Units: nanog_ml. Naming evidence: source metadata names `PRL` as `prolactin`."
},
{
"name": "da_infinity",
"label": "Da Infinity",
"maps_to": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.da_infinity",
"description": "Da Infinity. Maps to source symbol `DA_infinity`. Units: nanog_ml. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_variable_k_d",
"label": "Model Variable K D (source kD)",
"maps_to": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.model_variable_k_d",
"description": "Model Variable K D (source kD). Maps to source symbol `kD`. Units: nanog_ml. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_variable_k_o",
"label": "Model Variable K O (source kO)",
"maps_to": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.model_variable_k_o",
"description": "Model Variable K O (source kO). Maps to source symbol `kO`. Units: picog_ml. Naming evidence: source symbol is too ambiguous for a stronger public label."
}
]
},
"title": "Egli2004 - Rhythmic Secretion Prolactin Rats Action Oxytocin Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model",
"parameters": {
"model_path": "data/egli_bertram_sellix_freeman_2004.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model_state"
],
"from": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.state"
},
{
"to": [
"visualisation.physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model_summary"
],
"from": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model_trajectory"
],
"from": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model_variable_labels"
],
"from": "physiology_cellml_egli_bertram_sellix_freeman_2004_eglibertramsellixfreeman2004_model.variable_labels"
}
],
"package": "egli2004-rhythmic-secretion-prolactin-rats-action-oxytocin",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Egli, Bertram, Sellix, Freeman, 2004. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageegli2004-rhythmic-secretion-prolactin-rats-action-oxytocin
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother