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Source-faithful physiology lab for Rattanakul2003_BoneFormationModel. Public controls and outputs are mapped to real source symbols for bone and endocrine physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_pth",
"label": "Initial Pth",
"maps_to": "physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model.initial_pth",
"description": "Initial value for Pth. Maps to source symbol `x`. Units: native SBML value. Naming evidence: source metadata names `x` as `PTH`."
},
{
"name": "initial_active_osteoblasts",
"label": "Initial Active Osteoblasts",
"maps_to": "physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model.initial_active_osteoblasts",
"description": "Initial value for Active Osteoblasts. Maps to source symbol `z`. Units: native SBML value. Naming evidence: source metadata names `z` as `active osteoblasts`."
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model.trajectory"
},
{
"name": "species_labels",
"label": "Observable Labels",
"maps_to": "physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model.species_labels"
},
{
"name": "pth",
"label": "Pth",
"maps_to": "physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model.pth",
"description": "Pth. Maps to source symbol `x`. Units: native SBML value. Naming evidence: source metadata names `x` as `PTH`."
},
{
"name": "active_osteoblasts",
"label": "Active Osteoblasts",
"maps_to": "physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model.active_osteoblasts",
"description": "Active Osteoblasts. Maps to source symbol `z`. Units: native SBML value. Naming evidence: source metadata names `z` as `active osteoblasts`."
},
{
"name": "active_osteoclasts",
"label": "Active Osteoclasts",
"maps_to": "physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model.active_osteoclasts",
"description": "Active Osteoclasts. Maps to source symbol `y`. Units: native SBML value. Naming evidence: source metadata names `y` as `active osteoclasts`."
}
]
},
"title": "Rattanakul2003 - Boneformationmodel Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model",
"parameters": {
"model_path": "data/BIOMD0000000274.xml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model_state"
],
"from": "physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model.state"
},
{
"to": [
"visualisation.physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model_summary"
],
"from": "physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model.summary"
},
{
"to": [
"visualisation.physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model_trajectory"
],
"from": "physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model.trajectory"
},
{
"to": [
"visualisation.physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model_species_labels"
],
"from": "physiology_sbml_rattanakul2003_boneformationmodel_biomd0000000274_model.species_labels"
}
],
"package": "rattanakul2003-boneformationmodel",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Rattanakul2003_BoneFormationModel. Public controls and outputs are mapped to real source symbols for bone and endocrine physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagerattanakul2003-boneformationmodel
Created2026-05-23
Updated2026-06-13
physiologysbmlbiomodels_ebifaithfulvisualisationother