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Source-faithful physiology lab for NDCBE - The Physics of Physiology. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_q_1",
"label": "Initial Model State Q 1 (source q_1)",
"maps_to": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.initial_model_state_q_1",
"description": "Initial value for Model State Q 1 (source q_1). Maps to source symbol `q_1`. Units: fmol. Naming evidence: source symbol is too ambiguous for a stronger public label.",
"accepted_units": [
"fmol"
]
},
{
"name": "initial_model_state_q_2",
"label": "Initial Model State Q 2 (source q_2)",
"maps_to": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.initial_model_state_q_2",
"description": "Initial value for Model State Q 2 (source q_2). Maps to source symbol `q_2`. Units: fmol. Naming evidence: source symbol is too ambiguous for a stronger public label.",
"accepted_units": [
"fmol"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.variable_labels"
},
{
"name": "extracellular_sodium",
"label": "Extracellular Sodium",
"maps_to": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.extracellular_sodium",
"description": "Extracellular Sodium. Maps to source symbol `Nao`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_sodium",
"label": "Intracellular Sodium",
"maps_to": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.intracellular_sodium",
"description": "Intracellular Sodium. Maps to source symbol `Nai`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "extracellular_chloride",
"label": "Extracellular Chloride",
"maps_to": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.extracellular_chloride",
"description": "Extracellular Chloride. Maps to source symbol `Clo`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_chloride",
"label": "Intracellular Chloride",
"maps_to": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.intracellular_chloride",
"description": "Intracellular Chloride. Maps to source symbol `Cli`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_state_q_1",
"label": "Model State Q 1 (source q_1)",
"maps_to": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.model_state_q_1",
"description": "Model State Q 1 (source q_1). Maps to source symbol `q_1`. Units: fmol. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_q_2",
"label": "Model State Q 2 (source q_2)",
"maps_to": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.model_state_q_2",
"description": "Model State Q 2 (source q_2). Maps to source symbol `q_2`. Units: fmol. Naming evidence: source symbol is too ambiguous for a stronger public label."
}
]
},
"title": "Physiome c93 - Ndcbe Physics Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model",
"parameters": {
"model_path": "data/BG_NDCBE.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_ndcbe_the_physics_of_physiology_c93_model_state"
],
"from": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.state"
},
{
"to": [
"visualisation.physiology_cellml_ndcbe_the_physics_of_physiology_c93_model_summary"
],
"from": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_ndcbe_the_physics_of_physiology_c93_model_trajectory"
],
"from": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_ndcbe_the_physics_of_physiology_c93_model_variable_labels"
],
"from": "physiology_cellml_ndcbe_the_physics_of_physiology_c93_model.variable_labels"
}
],
"package": "physiomec93-ndcbe-physics",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for NDCBE - The Physics of Physiology. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiomec93-ndcbe-physics
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother