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This is a model with 20 cells - 20 cytplasms and 21 apoplasts - as described in the article: Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study. It can be used to explore systemsbiology twycross2010 auxin transport model1005200000 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_ext",
"label": "Initial Model State Ext",
"maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.initial_model_state_ext",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ext`."
},
{
"name": "initial_model_state_c9",
"label": "Initial Model State C9",
"maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.initial_model_state_c9",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `c9`."
},
{
"name": "initial_model_state_c8",
"label": "Initial Model State C8",
"maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.initial_model_state_c8",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `c8`."
},
{
"name": "initial_model_state_c7",
"label": "Initial Model State C7",
"maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.initial_model_state_c7",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `c7`."
},
{
"name": "initial_model_state_c6",
"label": "Initial Model State C6",
"maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.initial_model_state_c6",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `c6`."
},
{
"name": "initial_model_state_c5",
"label": "Initial Model State C5",
"maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.initial_model_state_c5",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `c5`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.species_labels"
},
{
"name": "ext",
"maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.ext"
},
{
"name": "model_state_c9",
"maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.model_state_c9"
},
{
"name": "model_state_c8",
"maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.model_state_c8"
},
{
"name": "model_state_c7",
"maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.model_state_c7"
},
{
"name": "model_state_c6",
"maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.model_state_c6"
},
{
"name": "model_state_c5",
"maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.model_state_c5"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Twycross2010 Auxin Transport Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model_state"
],
"from": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model_summary"
],
"from": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model_species_labels"
],
"from": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.species_labels"
}
],
"package": "twycross2010-auxin-transport",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This is a model with 20 cells - 20 cytplasms and 21 apoplasts - as described in the article: Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study. It can be used to explore systemsbiology twycross2010 auxin transport model1005200000 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagetwycross2010-auxin-transport
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother