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Clean Biosimulant lab for systems signaling model: Kok2020 - IFNalpha-induced signaling in Huh7.5 cells. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_bind_ifn_level",
"label": "Bind IFN",
"maps_to": "signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model.initial_bind_ifn_level",
"description": "Bind IFN source parameter. Maps to SBML symbol `BindIFN` and preserves the bundled default."
},
{
"name": "initial_dega_rec_ifnby_socs_level",
"label": "Dega Rec Ifnby SOCS",
"maps_to": "signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model.initial_dega_rec_ifnby_socs_level",
"description": "Dega Rec Ifnby SOCS source parameter. Maps to SBML symbol `degaRecIFNBySOCS` and preserves the bundled default."
},
{
"name": "initial_a_rec_ifna",
"label": "Initial A Rec Ifna",
"maps_to": "signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model.initial_a_rec_ifna",
"description": "Initial level of A Rec Ifna. Maps to SBML symbol `aRecIFN`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "stat1c",
"label": "Stat1c",
"maps_to": "signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model.stat1c",
"description": "Stat1c. Maps to SBML symbol `STAT1c` and is emitted in native SBML units."
},
{
"name": "stat2c",
"label": "Stat2c",
"maps_to": "signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model.stat2c",
"description": "Stat2c. Maps to SBML symbol `STAT2c` and is emitted in native SBML units."
},
{
"name": "p_stat1p_stat2c",
"label": "P Stat1p Stat2c",
"maps_to": "signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model.p_stat1p_stat2c",
"description": "P Stat1p Stat2c. Maps to SBML symbol `pSTAT1pSTAT2c` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cytokine-signaling",
"interferon-signaling",
"gpcr"
],
"title": "Kok2020 - IFNalpha-induced signaling in Huh7.5 cells Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model_state"
],
"from": "signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model.state"
},
{
"to": [
"visualisation.signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model_summary"
],
"from": "signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model_species_labels"
],
"from": "signaling_sbml_kok2020_ifnalpha_induced_signaling_in_huh7_5_cel_biomd0000000959_model.species_labels"
}
],
"package": "kok2020-ifnalpha-induced-signaling-in-huh7-5-cel",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Kok2020 - IFNalpha-induced signaling in Huh7.5 cells. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagekok2020-ifnalpha-induced-signaling-in-huh7-5-cel
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicytokine-signalinginterferon-signalinggpcrvisualisationother