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This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2011 The BioModels.net Team.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_atp",
"label": "Initial Model State ATP",
"maps_to": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.initial_model_state_atp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `atp`."
},
{
"name": "initial_model_state_ca",
"label": "Initial Model State Ca",
"maps_to": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.initial_model_state_ca",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ca`."
},
{
"name": "initial_model_state_e2",
"label": "Initial Model State E2",
"maps_to": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.initial_model_state_e2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `E2`."
},
{
"name": "initial_model_state_oro",
"label": "Initial Model State Oro",
"maps_to": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.initial_model_state_oro",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `oro`."
},
{
"name": "initial_model_state_omp",
"label": "Initial Model State Omp",
"maps_to": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.initial_model_state_omp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `omp`."
},
{
"name": "initial_model_state_dho",
"label": "Initial Model State Dho",
"maps_to": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.initial_model_state_dho",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `dho`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.species_labels"
},
{
"name": "atp",
"maps_to": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.atp"
},
{
"name": "model_state_ca",
"maps_to": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.model_state_ca"
},
{
"name": "model_state_e2",
"maps_to": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.model_state_e2"
},
{
"name": "oro",
"maps_to": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.oro"
},
{
"name": "omp",
"maps_to": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.omp"
},
{
"name": "dho",
"maps_to": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.dho"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Rodriguez2005 Denovo Pyrimidine Biosynthesis Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model_state"
],
"from": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model_summary"
],
"from": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model_species_labels"
],
"from": "systemsbiology_sbml_rodriguez2005_denovo_pyrimidine_biosynthesis_model0995500644_model.species_labels"
}
],
"package": "rodriguez2005-denovo-pyrimidine-biosynthesis",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2011 The BioModels.net Team.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagerodriguez2005-denovo-pyrimidine-biosynthesis
Created2026-06-13
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother