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This model is from the article: Microarray data can predict diurnal changes of starch content in the picoalga Ostreococcus. Sorokina O, Corellou F, Dauvillée D, Sorokin A, Goryanin I, Ball S, Bouget F.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_maltotriose",
"label": "Initial Maltotriose",
"maps_to": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.initial_maltotriose",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_16`."
},
{
"name": "initial_maltose",
"label": "Initial Maltose",
"maps_to": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.initial_maltose",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_37`."
},
{
"name": "initial_model_state_glu",
"label": "Initial Model State Glu",
"maps_to": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.initial_model_state_glu",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_39`."
},
{
"name": "initial_p_pi",
"label": "Initial P Pi",
"maps_to": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.initial_p_pi",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_13`."
},
{
"name": "initial_model_state_p",
"label": "Initial Model State P",
"maps_to": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.initial_model_state_p",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_7`."
},
{
"name": "initial_nadph",
"label": "Initial Nadph",
"maps_to": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.initial_nadph",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_3`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.species_labels"
},
{
"name": "maltotriose",
"maps_to": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.maltotriose"
},
{
"name": "maltose",
"maps_to": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.maltose"
},
{
"name": "glu",
"maps_to": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.glu"
},
{
"name": "p_pi",
"maps_to": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.p_pi"
},
{
"name": "model_state_p",
"maps_to": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.model_state_p"
},
{
"name": "nadph",
"maps_to": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.nadph"
}
]
},
"tags": [
"generegulation",
"metabolism",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Sorokina2011 Starchmetabolism Ostreococcus Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model_state"
],
"from": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model_summary"
],
"from": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model_species_labels"
],
"from": "systemsbiology_sbml_sorokina2011_starchmetabolism_ostreococcus_model1204240000_model.species_labels"
}
],
"package": "sorokina2011-starchmetabolism-ostreococcus",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This model is from the article: Microarray data can predict diurnal changes of starch content in the picoalga Ostreococcus. Sorokina O, Corellou F, Dauvillée D, Sorokin A, Goryanin I, Ball S, Bouget F.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesorokina2011-starchmetabolism-ostreococcus
Created2026-05-17
Updated2026-06-13
generegulationmetabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother