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Source-faithful physiology lab for Yamaguchi, Takaki, Matsubara, Yasuhara, Suga, 1996. Public controls and outputs are mapped to real source symbols for calcium handling.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cb_on",
"label": "Initial Cb On",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.initial_cb_on",
"description": "Initial value for Cb On. Maps to source symbol `CB_on`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_cum_cb_off",
"label": "Initial Cum Cb Off",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.initial_cum_cb_off",
"description": "Initial value for Cum Cb Off. Maps to source symbol `CumCB_off`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.variable_labels"
},
{
"name": "atp_concentration",
"label": "ATP Concentration",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.atp_concentration",
"description": "ATP Concentration. Maps to source symbol `ATP`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "atp_energy",
"label": "ATP Energy",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.atp_energy",
"description": "ATP Energy. Maps to source symbol `ATP_energy`. Units: energy. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "cum_cb_on_end",
"label": "Cum Cb On End",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.cum_cb_on_end",
"description": "Cum Cb On End. Maps to source symbol `CumCB_on_end`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "epsilon",
"label": "Epsilon",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.epsilon",
"description": "Epsilon. Maps to source symbol `epsilon`. Units: energy. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "phi",
"label": "Phi",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.phi",
"description": "Phi. Maps to source symbol `phi`. Units: force. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "cb_on",
"label": "Cb On",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.cb_on",
"description": "Cb On. Maps to source symbol `CB_on`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Yamaguchi1996 - Constancy Variability Contractile Efficiency Function Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model",
"parameters": {
"model_path": "data/yamaguchi_takaki_matsubara_yasuhara_suga_1996.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model_state"
],
"from": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.state"
},
{
"to": [
"visualisation.physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model_summary"
],
"from": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model_trajectory"
],
"from": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model_variable_labels"
],
"from": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.variable_labels"
}
],
"package": "yamaguchi1996-constancy-variability-contractile-efficie-939a5f5c",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Yamaguchi, Takaki, Matsubara, Yasuhara, Suga, 1996. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageyamaguchi1996-constancy-variability-contractile-efficie-939a5f5c
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother