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Clean Biosimulant lab for systems signaling model: Lemaire2004 - Role of RANK/RANKL/OPG pathway in bone remodelling process. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_responding_osteoblasts",
"label": "Initial Responding Osteoblasts",
"maps_to": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.initial_responding_osteoblasts",
"description": "Initial level of Responding Osteoblasts. Maps to SBML symbol `R`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "active_osteoblasts",
"label": "active Osteoblasts",
"maps_to": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.active_osteoblasts",
"description": "active Osteoblasts. Maps to SBML symbol `B` and is emitted in native SBML units."
},
{
"name": "active_osteoclasts",
"label": "active Osteoclasts",
"maps_to": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.active_osteoclasts",
"description": "active Osteoclasts. Maps to SBML symbol `C` and is emitted in native SBML units."
},
{
"name": "responding_osteoblasts",
"label": "Responding Osteoblasts",
"maps_to": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.responding_osteoblasts",
"description": "Responding Osteoblasts. Maps to SBML symbol `R` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"physiology"
],
"title": "Lemaire2004 - Role of RANK/RANKL/OPG pathway in bone remodelling process Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model_state"
],
"from": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.state"
},
{
"to": [
"visualisation.signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model_summary"
],
"from": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model_species_labels"
],
"from": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.species_labels"
}
],
"package": "lemaire2004-role-of-rank-rankl-opg-pathway-in-bo",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Lemaire2004 - Role of RANK/RANKL/OPG pathway in bone remodelling process. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagelemaire2004-role-of-rank-rankl-opg-pathway-in-bo
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebiphysiologyvisualisationother